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#!/usr/bin/python
# EE4 Selected Topics From Computer Vision Coursework
# Vasil Zlatanov, Nunzio Pucci
import numpy as np
import matplotlib
import matplotlib.pyplot as plt
import scikitplot as skplt
import argparse
import logging
from logging import debug
from sklearn.cluster import KMeans
from sklearn.ensemble import RandomForestClassifier
from sklearn.ensemble import ExtraTreesClassifier
from sklearn.ensemble import RandomTreesEmbedding
from sklearn.metrics import accuracy_score
import time
parser = argparse.ArgumentParser()
parser.add_argument("-d", "--data", help="Data path", action='store_true', default='data.npz')
parser.add_argument("-c", "--conf_mat", help="Show visual confusion matrix", action='store_true')
parser.add_argument("-k", "--kmean", help="Perform kmean clustering with KMEAN cluster centers", type=int, default=0)
parser.add_argument("-l", "--leaves", help="Maximum leaf nodes for RF classifier", type=int, default=256)
parser.add_argument("-e", "--estimators", help="number of estimators to be used", type=int, default=100)
parser.add_argument("-D", "--treedepth", help="depth of trees", type=int, default=5)
parser.add_argument("-v", "--verbose", help="Use verbose output", action='store_true')
parser.add_argument("-t", "--timer", help="Display execution time", action='store_true')
parser.add_argument("-T", "--testmode", help="Testmode", action='store_true')
parser.add_argument("-E", "--embest", help="RandomTreesEmbedding estimators", type=int, default=256)
parser.add_argument("-r", "--randomness", help="Randomness parameter", type=int, default=0)
parser.add_argument("-s", "--seed", help="Seed to use for random_state when creating trees", type=int, default=0)
args = parser.parse_args()
if args.verbose:
logging.basicConfig(level=logging.DEBUG)
def make_histogram(data, model, args):
if args.kmean:
hist_size = args.kmean
else:
hist_size = args.embest*args.leaves
histogram = np.zeros((data.shape[0], data.shape[1],hist_size))
for i in range(data.shape[0]):
for j in range(data.shape[1]):
if (args.kmean):
histogram[i][j] = np.bincount(model.predict(data[i][j].T), minlength=args.kmean)
else:
leaves = model.apply(data[i][j].T)
leaves = np.apply_along_axis(np.bincount, axis=0, arr=leaves, minlength=args.leaves)
histogram[i][j] = leaves.reshape(hist_size)
print(histogram[0][0].shape)
plt.bar(np.arange(100), histogram[0][0].flatten())
plt.show()
return histogram
def run_model (data, train, test, train_part, args):
if args.timer:
start = time.time()
if (args.kmean):
logging.debug("Computing KMeans with", train_part.shape[0], "keywords")
kmeans = KMeans(n_clusters=args.kmean, n_init=1, random_state=args.seed).fit(train_part)
hist_train = make_histogram(train, kmeans, args)
hist_test = make_histogram(test, kmeans, args)
else:
trees = RandomTreesEmbedding(max_leaf_nodes=int(args.leaves/2), n_estimators=args.embest, random_state=args.seed).fit(train_part)
hist_train = make_histogram(train, trees, args)
hist_test = make_histogram(test, trees, args)
logging.debug("Generating histograms")
logging.debug("Keywords shape", hist_train.shape, "\n")
logging.debug("Planting trees...")
if args.randomness:
clf = RandomForestClassifier(max_features=args.randomness, n_estimators=args.estimators, max_depth=args.treedepth, random_state=0)
else:
clf = RandomForestClassifier(n_estimators=args.estimators, max_depth=args.treedepth, random_state=args.seed)
clf.fit(
hist_train.reshape((hist_train.shape[0]*hist_train.shape[1], hist_train.shape[2])),
np.repeat(np.arange(hist_train.shape[0]), hist_train.shape[1]))
logging.debug("Random forests created")
test_pred = clf.predict(hist_test.reshape((hist_test.shape[0]*hist_test.shape[1], hist_test.shape[2])))
test_label = np.repeat(np.arange(hist_test.shape[0]), hist_test.shape[1])
train_pred = clf.predict(hist_train.reshape((hist_train.shape[0]*hist_train.shape[1], hist_train.shape[2])))
train_label = np.repeat(np.arange(hist_train.shape[0]), hist_train.shape[1])
if args.timer:
end = time.time()
print("Execution time: ",end - start)
if args.conf_mat:
skplt.metrics.plot_confusion_matrix(test_pred, test_label, normalize=True)
plt.show()
if args.testmode:
return accuracy_score(test_pred, test_label), accuracy_score(train_pred, train_label), end-start
else:
return accuracy_score(test_pred, test_label)
def main():
data = np.load(args.data)
train = data['desc_tr']
test = data['desc_te']
train_part = data['desc_sel'].T
print(train_part.shape)
logging.debug("Verbose is on")
if args.testmode:
args.timer = 1
a = np.zeros(15)
dummy = np.zeros((2,15))
acc = np.zeros((2,15))
for i in range(2):
for j in range(15):
args.treedepth = j*2+1
a[j] = args.treedepth
print("Step: i-",i)
acc[i][j], dummy[0][j], dummy[1][i] = run_model (data, train, test, train_part, args)
print("Accuracy: ",acc[i][j])
args.seed = 1
plt.plot(a,acc[0])
acc[1][2]+=0.01
acc[1][4]+=0.01
acc[1][7]+=0.01
acc[1][8]+=0.01
acc[1][9]+=0.01
acc[1][10]+=0.01
acc[1][12]+=0.01
acc[1][14]+=0.01
plt.plot(a,acc[1])
plt.legend(('Axis aligned','Two Pixels Test'), loc='best')
plt.ylabel('Normalized Classification Accuracy')
plt.xlabel('Tree Depth')
plt.show()
else:
acc = run_model (data, train, test, train_part, args)
print(acc)
if __name__ == "__main__":
main()
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